Data Integration, Manipulation and Visualization of Phylogenetic Trees

Guangchuang Yu

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English

Chapman & Hall/CRC
26 August 2024

Econometrics; Economic statistics; Medical research; Epidemiology & medical statistics; Applied mathematics

Series: Chapman & Hall/CRC Computational Biology Series

Data Integration, Manipulation and Visualization of Phylogenetic Trees introduces and demonstrates data integration, manipulation and visualization of phylogenetic trees using a suite of R packages, tidytree, treeio, ggtree and ggtreeExtra. Using the most comprehensive packages for phylogenetic data integration and visualization, contains numerous examples that can be used for teaching and learning. Ideal for undergraduate readers and researchers with a working knowledge of R and ggplot2.

Key Features:

Manipulating phylogenetic tree with associated data using tidy verbs Integrating phylogenetic data from diverse sources Visualizing phylogenetic data using grammar of graphics

By: Guangchuang Yu
Imprint: Chapman & Hall/CRC
Country of Publication: United Kingdom
Dimensions: Height: 254mm, Width: 178mm,
Weight: 508g
ISBN: 9781032245546
ISBN 10: 1032245549
Series: Chapman & Hall/CRC Computational Biology Series
Pages: 255
Publication Date: 26 August 2024
Audience: General/trade , ELT Advanced
Format: Paperback
Publisher's Status: Active

1. Importing Tree with Data, 2. Manipulating Tree with Data, 3. Exporting tree with data, 4. Phylogenetic Tree Visualization, 5. Phylogenetic Tree Annotation, 6. Visual Exploration of Phylogenetic Tree, 7. Plotting tree with data, 8. Annotating Tree with Silhouette Images and Sub-plots, 9. ggtree for other tree-like objects, 10. ggtreeExtra for presenting data on a circular layout, 11. Other ggtree extensions, 12. ggtree utilities, A. Frequently asked questions, B. Related tools, Figures and Tables Publications of the ggtree package suite, References, Index

Guangchuang Yu is a professor of bioinformatics, director of the Department of Bioinformatics, Southern Medical University. He earned his Ph.D. from the School of Public Health, The University of Hong Kong. As an active R user, he has authored several R packages and has supervised post-graduate students to develop a few other packages, including ggmsa, ggtreeExtra, MicrobiomeProfiler and MicrobiotaProcess.